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Open-source · Plant & animal breeding

Software and training for breeding programs

Browse open-source tools for breeding data and genomics, then find the tutorials and workshop materials that support your work.

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BIGapp BIGr Qploidy2
Genomic Analysis
DeltaBreed
Data Management
AlloMate BIGpopA Familia
Pedigree & Mating
HapApp (in development) HapSearch (in development)
Markers & Haplotypes
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Featured software

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Genomic Analysis

BIGr v0.7.2

R package Breedverse

Core genomic analysis functions for diploid and polyploid breeding programs.

GWAS Genomic selection Genomics Polyploid
Genomic Analysis

BIGapp v1.8.0

R Shiny app Breedverse

A user-friendly Shiny application for genomic analysis without command-line tools.

GWAS Genomic selection Genomics Visualization
Genomic Analysis

Qploidy2 v1.0.0

R package Breedverse

Ploidy, aneuploidy, and large-scale copy-number estimation from genotyping data.

Ploidy CNV Aneuploidy DArTag
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Breeding Insight is funded by the U.S. Department of Agriculture (USDA) Agricultural Research Service (ARS) through University of Florida/IFAS. Formerly at Cornell University.
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