Familia 2.1.0
Find Parentage, Validate Pedigree and PolyBreedTools now accept genotypes as text files (.txt/.csv), VCF files (.vcf/.vcf.gz), or 'PLINK' .ped files, in addition to the previous...
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Release notes for Breeding Insight software.
News
Release notes for Breeding Insight software.
Every release of Breeding Insight software, newest first. Filter by package to follow a single tool, or subscribe to the feed to be notified of new versions.
These entries are generated from each package’s GitHub release and changelog, so the repository remains the authoritative record.
BIGpopA 2.2.1
check_ped(): each cycle in dependencies is now reported once, as a closed path in which every id is a recorded parent of the one before it (e.g.
deltabreedquery 1.0.4
Minor bug fixes and
BIGpopA 2.2.0
validate_pedigree() and find_parentage(): founders_file now also accepts a character vector of ids or a data.frame (first column), in addition to a file path.
BIGpopA 2.1.0
New vcf_to_dosage() converts a VCF (.vcf / .vcf.gz) or vcfR object into allele-B dosages for any ploidy, as an id + markers table or an individuals x markers matrix.
deltabreedquery 1.0.3
First official public release of deltabreedquery.
Familia 2.0.0
Added a Ploidy selector to the Find Parentage and Validate Pedigree tabs, passed through to 'BIGpopA' so pedigree validation and parentage assignment now support any ploidy.
BIGpopA 2.0.0
find_parentage() and validate_pedigree() now support any ploidy through a new ploidy argument (default 2).
Familia 1.0.4
Updated the funding attribution banner on the Home tab to read "University of Florida" instead of "Cornell University", reflecting the correct institution.
BIGapp 1.8.0
updated minor edits
Familia 1.0.2
Fixed test directory for CRAN submission
AlloMate 2.1.0
Release notes for AlloMate 2.1.0.
AlloMate 2.0.0
Release notes for AlloMate 2.0.0.
Familia 1.0.0
Josue adds
BIGr 0.7.2
Fixed manual text errors
BIGapp 1.6.0
Improved user warnings and addressed minor bug fixes
deltabreedquery 0.1.1
This patch fixes several critical bugs in get_observations() that were causing data frames to be retrieved incorrectly
deltabreedquery 0.1.0
This initial alpha version should be functional when installed from Github via devtools::install_github("tyrwh/deltabreedquery")
BIGapp 1.5.1
This release includes bug fixes and new feature updates:
BIGr 0.6.2
Fixed the doi and name list in the CITATION file
BIGapp 1.3.0
Introduced several feature updates and bug fixes for BIGapp including documentation improvements, enhanced data processing and visualization options, and updated UI text.
BIGr 0.5.5
Updated DESCRIPTION
BIGapp 1.2.0
Feature updates and bug fixes:
BIGr 0.4.2
Minor update to the check_ped() function
BIGr 0.4.1
Minor bug fixes
BIGapp 1.1.0
This includes many feature updates - including:
BIGr 0.4.0
New functions and bug fixes:
BIGr 0.3.4
Bug fixes
BIGapp 1.0.0
This full public release of BIGapp includes:
BIGapp 0.6.1-beta
-Minor bug fixes
BIGapp 0.6.0-beta
Bug fixes and feature enhancements:
BIGapp 0.5.0-beta
Original code was updated into the R Golem format
BIGr 0.3.1
Fixed a bug with the filterVCF function where values in the INFO column were causing errors.
BIGr 0.3.0
Updated documentation
BIGr 0.2.0
Two functions have been added for this release:
BIGr 0.0.3
Initial versioned release of the Breeding Insight Genomics R package.
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